AMDAT

Creates a list of all trajectories based on a binning scheme (specific subsets are called in analysis tools by taking the intersection of this list with a trajectory list defined with the create_list command).

create_bin_list <listname>
<type> <args>

Formatting of second line is:

type args effect
all <n_xbins> <n_ybins> <n_zbins> All trajectories are binned into a (n_xbins,n_ybins,n_zbins) structure where the bins are evenly distributed across the dimensions of the entire system
region <n_xbins> <n_ybins> <n_zbins> <xlo> <xhi> <ylo> <yhi> <zlo> <zhi> All trajectories are binned similarly to all, but the bins are evenly split across the specified region.
distance trajectory <list_to_bin> <list_to_take_distance_from> <bin_thickness> <n_bins> All trajectories are binned as a function of distance from the nearest particle in a second list.
distance point <list_to_bin> <x_coordinate> <y_coordinate> <z_coordinate> <bin_thickness> <n_bins> All trajectories are binned as a function of radial distance from the specified point.
distance plane <direction> <list_to_bin> <axes perpendicular to plane> <position of plane> <bin_thickness> <n_bins> All trajectories are binned as a function of perpendicular distance from the specified plane. <direction> can be above or below, which will only include particles above or below the plane, or average which will include particles on both sides of the plane.